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The disk usage looks to be correct. /backups has almost 1GB worth of backups in it, and /usr/local/cpanel-rollback has a bunch of backup copies of cPanel config files. You can safely delete /usr/local/cpanel-rollback
Give du -h --max-depth=1 | grep G (or M to filter for anything that uses less than 1GB) a try next time you want to hunt down what's using the majority of your disk space.
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