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It seems that:
1 - cpanel recent upgrade install upgrades Spam Assassin DB to version 3.0
2 - Cpanel's tools are not upgraded to work with Spam Assassin 3.0
3 - the upgrade / synch of the databases has to be done MANUALLY.
Patrickb had to work on the server I'm on for some time to make stuff work. With the new configuration, you cannot use the Cpanel to edit your spam assassin prefs. You have to use Cpanel file manager or edit offline and upload with FTP.
If you're experiencing this error, you'll want to contact support. You may want to mention or reference this message in this thread. Bottom line, Cpanel broke it.
John
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